List of primers used to amplify the rod (SLC24A1) and cone (SLC24A2) exchanger genes
SLC24A1 primers
|
Fragment |
Forward (5' to 3') |
Reverse (5' to 3') |
|
Promoter |
gggtcagagccagatctacc |
aatggatggagaatggccag |
|
Exon 1 |
tgggtattagccacgatcgg |
caccccagctgatccctcc |
|
Exon 2-5'UTR |
cccagatctcctcttagtgg |
ccatcctgatcaatttcccc |
|
Exon 2A |
aatgagaggccttctgtaac |
tcttggttgttgttgggatc |
|
Exon 2B |
cccagtatgcctaaaagaac |
aagttggggtgctatcaaac |
|
Exon 2C |
aaaccaccccaaccactctc |
tgctgtggaaggtttctttgc |
|
Exon 2D |
aaacagccccagccatagtc |
cgcctgccacatcctcggag |
|
Exon 2E |
cgacgagtacttcgttccagcc |
ggctctcccaccaggcaatg |
|
Exon 2F |
tgctcatcctcttcttcctg |
ctcaaaggggctagagaaac |
|
Exon 3 |
gtctcgccacaacatctcgtg |
gatcatccactgagaccctgc |
|
Exon 4 |
ctttatgggaaagaggcaagg |
cagctgcaggagggaaggag |
|
Exon 5 |
gtggcagggatgatcctaca |
ggcaggagaaaacccactgg |
|
Exon 6 |
ccagcttccttcagaaccttg |
gttccttccctagacctctcc |
|
Exon 7A |
tggggagtaacataaggaaaac |
tcctcttcgctatcccctc |
|
Exon 7B |
agaagatggagggggaagtg |
gggataaagagtctgagatac |
|
Exon 8 |
cctctacagcttacttcttg |
acctgctggtagaggatttc |
|
Exon 9 |
tgtgcctcaggtttttcacc |
gtcatacttaacaccccttag |
|
Exon 10 |
aaacattaaggatattcacatcg |
tagggtcacaagagatacag |
|
Poly A1 |
aactcttattgttgtgtttctg |
accactgatggagacaacac |
|
Poly A2 |
ctaaggtgttccaagtattcc |
ccaaatgacctaaagataagg |
SLC24A2 primers
|
Fragment |
Forward (5' to 3') |
Reverse (5' to 3') |
|
Exon 2A |
accatatccaccagaagacc |
tcctgtgctctgtgtatctg |
|
Exon 2B |
caatcagtgccttttctgag |
cttttcttctctcctcaagg |
|
Exon 2C |
aaggagactacccgaaagac |
ctgtgagcgataaatacccc |
|
Exon 2D |
cccagaacttttcacatctc |
ctttcccaccacatgatgac |
|
Exon 2E |
cattgttgacttgatcatgc |
gaaccgtagtcaagaaaagc |
|
Exon 3 |
ctttgtcttttgtctttgcc |
aggcacacaaacaggtacag |
|
Exon 4 |
cattcctgagactaaccatc |
acaagttcccaaaccaaagc |
|
Exon 5 |
gctcgttccttatctttgtg |
aaagccaatgcatacaattc |
|
Exon 6 |
cattgtgtctccttcctgcc |
ggaaaggtatggggtggatg |
|
Exon 7 |
tctctctctgtgtgtgtgtg |
agaacaacagcccagaagag |
|
Exon 8 |
ttgttgtgcctgtgtacatt |
ccatatgttttacaagggaac |
|
Exon 9 |
ttccagatcagtctcaatgg |
aaacaaggcagaggcatgtc |
|
Exon 10 |
tgagatgtttattcctgtcc |
ggtgcacacctttgtagaac |
|
Exon 11A |
tgtcttcccactcccctctg |
acttgcagagggcgatagag |
|
Exon 11B |
ttcatcatgctgctcttcgtc |
ctgctggtgcaagatatggc |